Genomatix
by Genomatix
Genomatix provides complete systems integrating genomic information management with sequence analysis generating a unique research environment. Genomatix is the technology leader in regulatory sequence annotation and analysis and sets new standards in information integration in functional genomics.
-
GenomatixSuite
GenomatixSuite is the comprehensive bioinformatics software bundle consisting of various databases and tools. More...
-
RegionMiner
RegionMiner analyses genomic regions coming from high-throughput Chromatin Immunoprecipitation experiments such as ChIP-on-chip, ChIP-Seq (deep sequencing) or methylation studies. It determines the genomic context for the enriched regions and evaluates the transcription factor binding sites (TFBS). More...
-
ChipInspector
ChipInspector extracts significant information right from the expression level of single probes from microarrays. Sophisticated analysis techniques and state-of-the-art genomic knowledge dramatically increase the number of significant features while simultaneously reducing false positive rates by an order of magnitude. ChipInspector has been shown to deliver useful results even from several years old formalin-fixed paraffin-embedded prostate cancer specimens. More...
-
ElDorado
ElDorado is the Genomatix genome annotation. It is based on the publicly available reference genome assemblies of 18 different organisms. Information from a variety of different sources together with data generated by Genomatix' proprietary algorithms is used to set up a database of more than 500 gigabytes of quality checked data. The individual elements are highly linked to external data sources (e.g. NCBI, Ensembl, TIGR, ...). More...
-
Gene2Promoter
Gene2Promoter provides access to promoter sequences of all genes annotated in the available genomes. For each locus the chromosomal location and a short description of the corresponding gene is provided together with the promoters and transcripts. Several tasks for comparative analysis of the selected promoters can be started directly from the Gene2Promoter output. The number of input genes/sequences is limited to 1,000. More...
-
BiblioSphere
BiblioSphere PathwayEdition selects pathway instances most relevant for your individual experimental setup. Link significant genes from your experiments to the world's largest collection of biological networks and go way beyond what "generic" pathway tools can do. More...
-
LitInspector
LitInspector is Genomatix' new tool for searching literature abstracts from NCBI's PubMed. Users can search for genes, gene functions and signal transduction pathways free of charge. More...
-
GEMS Launcher
GEMS Launcher offers the technology to assess the functional structure of genomic sequences by an integrated collection of tasks tailored to the actual needs of research in functional genomics. More...
-
MatInspector
MatInspector is the internationally renowned tool for transcription factor analysis. It utilises MatBase, the comprehensive transcription factor knowledge base, to locate transcription factor binding sites in sequences of unlimited length. More...
-
MatBase
MatBase is the knowledge base for getting comprehensive transcription factor information. It contains information on transcription factors and the corresponding weight matrices used by MatInspector to locate potential binding sites of these transcription factors in DNA sequences. In addition MatBase contains information on regulatory interactions between transcription factors and other genes, regulatory modules (i.e. pairs or groups of transcription factor binding sites with a proven regulatory function). More...
-
DiAlign
DiAlign is a (DNA or protein) alignment program that relies on comparison of whole segments of sequences instead of comparison of single nucleic/amino acids. More...
-
Genomatix Tools
Various tools for sequence statistics, extraction, formatting, and other tasks. More...